IL_9B00_169
3D structure
- PDB id
- 9B00 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with berberine analog of chloramphenicol CAM-BER, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.80A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- GAUG*CUAAUC
- Length
- 10 nucleotides
- Bulged bases
- 9B00|1|1a|U|1257, 9B00|1|1a|U|1278, 9B00|1|1a|A|1280
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9B00_169 not in the Motif Atlas
- Homologous match to IL_4LFB_052
- Geometric discrepancy: 0.1752
- The information below is about IL_4LFB_052
- Detailed Annotation
- 180 degree turn
- Broad Annotation
- No text annotation
- Motif group
- IL_08849.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
9B00|1|1a|G|1255
9B00|1|1a|A|1256
9B00|1|1a|U|1257
9B00|1|1a|G|1258
*
9B00|1|1a|C|1277
9B00|1|1a|U|1278
9B00|1|1a|A|1279
9B00|1|1a|A|1280
9B00|1|1a|U|1281
9B00|1|1a|C|1282
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1c
- 30S ribosomal protein S3
- Chain 1j
- 30S ribosomal protein S10
- Chain 1n
- 30S ribosomal protein S14 type Z
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