IL_9B00_173

3D structure

PDB id

9B00 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with berberine analog of chloramphenicol CAM-BER, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

C(5MC)G*CAAG

Length

7 nucleotides

Bulged bases

9B00|1|1a|A|1503

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B00_173 not in the Motif Atlas

Homologous match to IL_5J7L_058

Geometric discrepancy: 0.109

The information below is about IL_5J7L_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

9B00|1|1a|C|1399
9B00|1|1a|5MC|1400
9B00|1|1a|G|1401
*
9B00|1|1a|C|1501
9B00|1|1a|A|1502
9B00|1|1a|A|1503
9B00|1|1a|G|1504

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1v

MF-mRNA

Chain 1x

Transfer RNA; tRNA