IL_9B00_181

3D structure

PDB id

9B00 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with berberine analog of chloramphenicol CAM-BER, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GCC*GGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GCC,GGC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B00_181 not in the Motif Atlas

Geometric match to IL_7A0S_031

Geometric discrepancy: 0.3155

The information below is about IL_7A0S_031

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

9B00|1|1w|G|1
9B00|1|1w|C|2
9B00|1|1w|C|3
*
9B00|1|1w|G|70
9B00|1|1w|G|71
9B00|1|1w|C|72

Current chains

Chain 1w

A-site and E-site Deacylated tRNAphe

Nearby chains

Chain 10

50S ribosomal protein L27

Chain 1A

Large subunit ribosomal RNA; LSU rRNA