IL_9B00_231

3D structure

PDB id

9B00 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with berberine analog of chloramphenicol CAM-BER, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CUAAG*CGAAG

Length

10 nucleotides

Bulged bases

9B00|1|2A|A|1379

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B00_231 not in the Motif Atlas

Homologous match to IL_8VTW_051

Geometric discrepancy: 0.0654

The information below is about IL_8VTW_051

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_89002.4

Basepair signature

cWW-tWH-cWW-L-cWW-tHS

Number of instances in this motif group

15

Unit IDs

9B00|1|2A|C|1351
9B00|1|2A|U|1352
9B00|1|2A|A|1353
9B00|1|2A|A|1354
9B00|1|2A|G|1355
*
9B00|1|2A|C|1376
9B00|1|2A|G|1377
9B00|1|2A|A|1378
9B00|1|2A|A|1379
9B00|1|2A|G|1380

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34

Chain 2D

50S ribosomal protein L2