IL_9B00_232

3D structure

PDB id

9B00 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with berberine analog of chloramphenicol CAM-BER, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UGAAG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B00_232 not in the Motif Atlas

Homologous match to IL_8VTW_052

Geometric discrepancy: 0.1008

The information below is about IL_8VTW_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22281.1

Basepair signature

cWW-L-R-tWW-tHS-cWW

Number of instances in this motif group

2

Unit IDs

9B00|1|2A|U|1357
9B00|1|2A|G|1358
9B00|1|2A|A|1359
9B00|1|2A|A|1360
9B00|1|2A|G|1361
*
9B00|1|2A|C|1370
9B00|1|2A|G|1371
9B00|1|2A|U|1372
9B00|1|2A|A|1373
9B00|1|2A|G|1374

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 21

50S ribosomal protein L28

Chain 27

50S ribosomal protein L34

Chain 2D

50S ribosomal protein L2