IL_9B00_266

3D structure

PDB id

9B00 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with berberine analog of chloramphenicol CAM-BER, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGAG*CGCCGGUGAAAUAC

Length

18 nucleotides

Bulged bases

9B00|1|2A|G|2168

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B00_266 not in the Motif Atlas

Homologous match to IL_3U4M_003

Geometric discrepancy: 0.3902

The information below is about IL_3U4M_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75283.2

Basepair signature

cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

Number of instances in this motif group

3

Unit IDs

9B00|1|2A|G|2124
9B00|1|2A|G|2125
9B00|1|2A|A|2126
9B00|1|2A|G|2127
*
9B00|1|2A|C|2161
9B00|1|2A|G|2162
9B00|1|2A|C|2163
9B00|1|2A|C|2164
9B00|1|2A|G|2165
9B00|1|2A|G|2166
9B00|1|2A|U|2167
9B00|1|2A|G|2168
9B00|1|2A|A|2169
9B00|1|2A|A|2170
9B00|1|2A|A|2171
9B00|1|2A|U|2172
9B00|1|2A|A|2173
9B00|1|2A|C|2174

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2y

Transfer RNA; tRNA