IL_9B00_287

3D structure

PDB id

9B00 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with berberine analog of chloramphenicol CAM-BER, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GAUAAC*GGAAGC

Length

12 nucleotides

Bulged bases

9B00|1|2A|A|2765

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B00_287 not in the Motif Atlas

Homologous match to IL_8VTW_106

Geometric discrepancy: 0.0746

The information below is about IL_8VTW_106

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_49767.7

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

9B00|1|2A|G|2737
9B00|1|2A|A|2738
9B00|1|2A|U|2739
9B00|1|2A|A|2740
9B00|1|2A|A|2741
9B00|1|2A|C|2742
*
9B00|1|2A|G|2762
9B00|1|2A|G|2763
9B00|1|2A|A|2764
9B00|1|2A|A|2765
9B00|1|2A|G|2766
9B00|1|2A|C|2767

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 29

50S ribosomal protein L36

Chain 2H

50S ribosomal protein L6

Chain 2N

50S ribosomal protein L13