IL_9B00_360
3D structure
- PDB id
- 9B00 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with berberine analog of chloramphenicol CAM-BER, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.80A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- CGCUGAC*GGUGGAG
- Length
- 14 nucleotides
- Bulged bases
- 9B00|1|1A|G|932
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9B00_360 not in the Motif Atlas
- Homologous match to IL_9DFE_024
- Geometric discrepancy: 0.0627
- The information below is about IL_9DFE_024
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_68243.1
- Basepair signature
- cWW-L-cWW-cWW-R-L-tHS-cWW
- Number of instances in this motif group
- 1
Unit IDs
9B00|1|1A|C|844
9B00|1|1A|G|845
9B00|1|1A|C|846
9B00|1|1A|U|847
9B00|1|1A|G|848
9B00|1|1A|A|849
9B00|1|1A|C|850
*
9B00|1|1A|G|927
9B00|1|1A|G|928
9B00|1|1A|U|930
9B00|1|1A|G|931
9B00|1|1A|G|932
9B00|1|1A|A|933
9B00|1|1A|G|934
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 13
- 50S ribosomal protein L30
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