IL_9B0G_115

3D structure

PDB id

9B0G (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Hibernating class4 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

UG*UAAA

Length

6 nucleotides

Bulged bases

9B0G|1|L5|A|3746, 9B0G|1|L5|A|3747

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B0G_115 not in the Motif Atlas

Homologous match to IL_8P9A_313

Geometric discrepancy: 0.0945

The information below is about IL_8P9A_313

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_71421.2

Basepair signature

cWW-cWW

Number of instances in this motif group

35

Unit IDs

9B0G|1|L5|U|3704
9B0G|1|L5|G|3705
*
9B0G|1|L5|U|3745
9B0G|1|L5|A|3746
9B0G|1|L5|A|3747
9B0G|1|L5|A|3748

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain S2

Small subunit ribosomal RNA; SSU rRNA