IL_9B0J_017
3D structure
- PDB id
- 9B0J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human unrotated hibernating with CCDC124 state 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.84 Å
Loop
- Sequence
- GAAC*GAGUUCAAGAGGGC
- Length
- 18 nucleotides
- Bulged bases
- 9B0J|1|L5|G|409, 9B0J|1|L5|G|413
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9B0J_017 not in the Motif Atlas
- Geometric match to IL_8CRE_015
- Geometric discrepancy: 0.1102
- The information below is about IL_8CRE_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_81516.2
- Basepair signature
- cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L
- Number of instances in this motif group
- 6
Unit IDs
9B0J|1|L5|G|387
9B0J|1|L5|A|388
9B0J|1|L5|A|389
9B0J|1|L5|C|390
*
9B0J|1|L5|G|401
9B0J|1|L5|A|402
9B0J|1|L5|G|403
9B0J|1|L5|U|404
9B0J|1|L5|U|405
9B0J|1|L5|C|406
9B0J|1|L5|A|407
9B0J|1|L5|A|408
9B0J|1|L5|G|409
9B0J|1|L5|A|410
9B0J|1|L5|G|411
9B0J|1|L5|G|412
9B0J|1|L5|G|413
9B0J|1|L5|C|414
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain L8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LP
- 60S ribosomal protein L17
- Chain LY
- 60S ribosomal protein L26
- Chain Ll
- 60S ribosomal protein L39
Coloring options: