IL_9B0J_037

3D structure

PDB id

9B0J (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human unrotated hibernating with CCDC124 state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.84 Å

Loop

Sequence

GAAGGUGG*UGUUACAGC

Length

17 nucleotides

Bulged bases

9B0J|1|L5|G|748, 9B0J|1|L5|C|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B0J_037 not in the Motif Atlas

Geometric match to IL_8CRE_022

Geometric discrepancy: 0.1425

The information below is about IL_8CRE_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_43858.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

9B0J|1|L5|G|745
9B0J|1|L5|A|746
9B0J|1|L5|A|747
9B0J|1|L5|G|748
9B0J|1|L5|G|749
9B0J|1|L5|U|750
9B0J|1|L5|G|751
9B0J|1|L5|G|752
*
9B0J|1|L5|U|911
9B0J|1|L5|G|912
9B0J|1|L5|U|913
9B0J|1|L5|U|914
9B0J|1|L5|A|915
9B0J|1|L5|C|916
9B0J|1|L5|A|917
9B0J|1|L5|G|918
9B0J|1|L5|C|919

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LM

60S ribosomal protein L14

Chain LS

60S ribosomal protein L18a