IL_9B0J_246
3D structure
- PDB id
- 9B0J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human unrotated hibernating with CCDC124 state 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.84 Å
Loop
- Sequence
- ACCA*UCCCU
- Length
- 9 nucleotides
- Bulged bases
- 9B0J|1|S2|C|1215, 9B0J|1|S2|C|1216
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9B0J_246 not in the Motif Atlas
- Homologous match to IL_8P9A_431
- Geometric discrepancy: 0.1285
- The information below is about IL_8P9A_431
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_63596.12
- Basepair signature
- cWW-cWS-cSH-tWH-cWW-L
- Number of instances in this motif group
- 22
Unit IDs
9B0J|1|S2|A|1214
9B0J|1|S2|C|1215
9B0J|1|S2|C|1216
9B0J|1|S2|A|1217
*
9B0J|1|S2|U|1681
9B0J|1|S2|C|1682
9B0J|1|S2|C|1683
9B0J|1|S2|C|1684
9B0J|1|S2|U|1685
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain Et
- Transfer RNA; tRNA
- Chain SF
- 40S ribosomal protein S5
- Chain SQ
- Small ribosomal subunit protein uS9
- Chain SU
- 40S ribosomal protein S20
- Chain Sc
- 40S ribosomal protein S28
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