IL_9B0N_123

3D structure

PDB id

9B0N (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Post-eEF1A-AT-P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.92 Å

Loop

Sequence

UCAAAGU*AAUGAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B0N_123 not in the Motif Atlas

Homologous match to IL_8CRE_093

Geometric discrepancy: 0.1551

The information below is about IL_8CRE_093

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_88116.2

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

3

Unit IDs

9B0N|1|L5|U|3715
9B0N|1|L5|C|3716
9B0N|1|L5|A|3717
9B0N|1|L5|A|3718
9B0N|1|L5|A|3719
9B0N|1|L5|G|3720
9B0N|1|L5|U|3721
*
9B0N|1|L5|A|3732
9B0N|1|L5|A|3733
9B0N|1|L5|U|3734
9B0N|1|L5|G|3735
9B0N|1|L5|A|3736
9B0N|1|L5|A|3737
9B0N|1|L5|G|3738

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain Li

60S ribosomal protein L36