IL_9B0N_148

3D structure

PDB id

9B0N (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Post-eEF1A-AT-P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.92 Å

Loop

Sequence

UUG*CCAAG

Length

8 nucleotides

Bulged bases

9B0N|1|L5|A|4488

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B0N_148 not in the Motif Atlas

Geometric match to IL_3DD2_004

Geometric discrepancy: 0.3849

The information below is about IL_3DD2_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_09353.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

9B0N|1|L5|U|4468
9B0N|1|L5|U|4469
9B0N|1|L5|G|4470
*
9B0N|1|L5|C|4485
9B0N|1|L5|C|4486
9B0N|1|L5|A|4487
9B0N|1|L5|A|4488
9B0N|1|L5|G|4489

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LH

60S ribosomal protein L9

Chain LO

60S ribosomal protein L13a

Chain Lm

Large ribosomal subunit protein eL40