IL_9B0P_010

3D structure

PDB id

9B0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Hibernating class1 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CCGCU*GGCG

Length

9 nucleotides

Bulged bases

9B0P|1|L5|C|183

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B0P_010 not in the Motif Atlas

Geometric match to IL_7VYX_002

Geometric discrepancy: 0.3859

The information below is about IL_7VYX_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

9B0P|1|L5|C|180
9B0P|1|L5|C|181
9B0P|1|L5|G|182
9B0P|1|L5|C|183
9B0P|1|L5|U|184
*
9B0P|1|L5|G|253
9B0P|1|L5|G|254
9B0P|1|L5|C|255
9B0P|1|L5|G|256

Current chains

Chain L5

28S rRNA [Homo sapiens]

Nearby chains

Chain LL

Large ribosomal subunit protein eL13

Chain Lh

60S ribosomal protein L35