3D structure

PDB id
9B0P (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human Hibernating class1 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.82 Å

Loop

Sequence
GUCU*AAC
Length
7 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9B0P_068 not in the Motif Atlas
Geometric match to IL_8C3A_419
Geometric discrepancy: 0.3818
The information below is about IL_8C3A_419
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_47767.1
Basepair signature
cWW-L-R-L-cWW
Number of instances in this motif group
7

Unit IDs

9B0P|1|L5|G|1753
9B0P|1|L5|U|1754
9B0P|1|L5|C|1755
9B0P|1|L5|U|1756
*
9B0P|1|L5|A|1775
9B0P|1|L5|A|1776
9B0P|1|L5|C|1777

Current chains

Chain L5
28S rRNA [Homo sapiens]

Nearby chains

Chain LD
Large ribosomal subunit protein uL18
Chain LI
Ribosomal protein uL16-like

Coloring options:


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