IL_9B0P_133

3D structure

PDB id

9B0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Hibernating class1 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

UUG*UG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B0P_133 not in the Motif Atlas

Homologous match to IL_8CRE_112

Geometric discrepancy: 0.0796

The information below is about IL_8CRE_112

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07039.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

9B0P|1|L5|U|4403
9B0P|1|L5|U|4404
9B0P|1|L5|G|4405
*
9B0P|1|L5|U|4439
9B0P|1|L5|G|4440

Current chains

Chain L5

28S rRNA [Homo sapiens]

Nearby chains

Chain LI

Ribosomal protein uL16-like