IL_9B0P_138

3D structure

PDB id

9B0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Hibernating class1 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CU*AACG

Length

6 nucleotides

Bulged bases

9B0P|1|L5|A|4518, 9B0P|1|L5|C|4519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B0P_138 not in the Motif Atlas

Homologous match to IL_8P9A_336

Geometric discrepancy: 0.059

The information below is about IL_8P9A_336

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_44609.1

Basepair signature

cWW-cWW

Number of instances in this motif group

28

Unit IDs

9B0P|1|L5|C|4458
9B0P|1|L5|U|4459
*
9B0P|1|L5|A|4517
9B0P|1|L5|A|4518
9B0P|1|L5|C|4519
9B0P|1|L5|G|4520

Current chains

Chain L5

28S rRNA [Homo sapiens]

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain LO

60S ribosomal protein L13a

Chain LV

60S ribosomal protein L23