IL_9B0P_178

3D structure

PDB id

9B0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Hibernating class1 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

GCA*UAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B0P_178 not in the Motif Atlas

Geometric match to IL_8C3A_427

Geometric discrepancy: 0.1348

The information below is about IL_8C3A_427

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_10289.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

237

Unit IDs

9B0P|1|S2|G|23
9B0P|1|S2|C|24
9B0P|1|S2|A|25
*
9B0P|1|S2|U|649
9B0P|1|S2|A|650
9B0P|1|S2|U|651

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SJ

40S ribosomal protein S9

Chain SX

40S ribosomal protein S23