IL_9B0P_187

3D structure

PDB id

9B0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Hibernating class1 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

UGGU*AA

Length

6 nucleotides

Bulged bases

9B0P|1|S2|G|113

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B0P_187 not in the Motif Atlas

Homologous match to IL_8CRE_398

Geometric discrepancy: 0.2177

The information below is about IL_8CRE_398

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_71421.1

Basepair signature

cWW-cWW

Number of instances in this motif group

27

Unit IDs

9B0P|1|S2|U|112
9B0P|1|S2|G|113
9B0P|1|S2|G|114
9B0P|1|S2|U|115
*
9B0P|1|S2|A|348
9B0P|1|S2|A|349

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SE

Small ribosomal subunit protein eS4, X isoform

Chain SI

40S ribosomal protein S8

Chain SL

40S ribosomal protein S11