IL_9B0P_226

3D structure

PDB id

9B0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Hibernating class1 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

GUAU*AGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B0P_226 not in the Motif Atlas

Homologous match to IL_8CRE_435

Geometric discrepancy: 0.0786

The information below is about IL_8CRE_435

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

9B0P|1|S2|G|942
9B0P|1|S2|U|943
9B0P|1|S2|A|944
9B0P|1|S2|U|945
*
9B0P|1|S2|A|981
9B0P|1|S2|G|982
9B0P|1|S2|A|983
9B0P|1|S2|C|984

Current chains

Chain S2

18S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain SB

40S ribosomal protein S3a

Chain SO

Small ribosomal subunit protein uS11