IL_9B0P_259

3D structure

PDB id

9B0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Hibernating class1 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

UAC*GCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B0P_259 not in the Motif Atlas

Homologous match to IL_8CRE_464

Geometric discrepancy: 0.1813

The information below is about IL_8CRE_464

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

9B0P|1|S2|U|1560
9B0P|1|S2|A|1561
9B0P|1|S2|C|1562
*
9B0P|1|S2|G|1573
9B0P|1|S2|C|1574
9B0P|1|S2|G|1575

Current chains

Chain S2

18S rRNA

Nearby chains

Chain ST

40S ribosomal protein S19