IL_9B0Q_228

3D structure

PDB id

9B0Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human top-back di-ribosome structure (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAAG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B0Q_228 not in the Motif Atlas

Homologous match to IL_8CRE_438

Geometric discrepancy: 0.0701

The information below is about IL_8CRE_438

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_05821.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

17

Unit IDs

9B0Q|1|S2|C|1047
9B0Q|1|S2|G|1048
9B0Q|1|S2|A|1049
9B0Q|1|S2|A|1050
9B0Q|1|S2|G|1051
*
9B0Q|1|S2|C|1067
9B0Q|1|S2|G|1068
9B0Q|1|S2|U|1069
9B0Q|1|S2|A|1070
9B0Q|1|S2|G|1071

Current chains

Chain S2

18S rRNA [Homo sapiens]

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain LA

60S ribosomal protein L8

Chain SO

Small ribosomal subunit protein uS11

Chain Sa

40S ribosomal protein S26