IL_9B0Q_239
3D structure
- PDB id
- 9B0Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human top-back di-ribosome structure (Composite map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GCC*GUC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9B0Q_239 not in the Motif Atlas
- Homologous match to IL_8CRE_448
- Geometric discrepancy: 0.1916
- The information below is about IL_8CRE_448
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_01003.4
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 215
Unit IDs
9B0Q|1|S2|G|1270
9B0Q|1|S2|C|1271
9B0Q|1|S2|C|1272
*
9B0Q|1|S2|G|1510
9B0Q|1|S2|U|1511
9B0Q|1|S2|C|1512
Current chains
- Chain S2
- 18S rRNA [Homo sapiens]
Nearby chains
- Chain SK
- 40S ribosomal protein S10
- Chain SP
- Small ribosomal subunit protein uS19
- Chain Sd
- 40S ribosomal protein S29
- Chain Sf
- Ubiquitin-40S ribosomal protein S27a
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