IL_9B0Q_491
3D structure
- PDB id
- 9B0Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human top-back di-ribosome structure (Composite map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GAAAAAAUU*ACCGCAGC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9B0Q_491 not in the Motif Atlas
- Homologous match to IL_8CRE_430
- Geometric discrepancy: 0.3796
- The information below is about IL_8CRE_430
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_59049.2
- Basepair signature
- cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
9B0Q|1|s2|G|807
9B0Q|1|s2|A|808
9B0Q|1|s2|A|809
9B0Q|1|s2|A|810
9B0Q|1|s2|A|811
9B0Q|1|s2|A|812
9B0Q|1|s2|A|813
9B0Q|1|s2|U|814
9B0Q|1|s2|U|815
*
9B0Q|1|s2|A|849
9B0Q|1|s2|C|850
9B0Q|1|s2|C|851
9B0Q|1|s2|G|852
9B0Q|1|s2|C|853
9B0Q|1|s2|A|854
9B0Q|1|s2|G|855
9B0Q|1|s2|C|856
Current chains
- Chain s2
- 18S rRNA [Homo sapiens]
Nearby chains
- Chain sE
- Small ribosomal subunit protein eS4, X isoform
- Chain sJ
- 40S ribosomal protein S9
- Chain sL
- 40S ribosomal protein S11
- Chain sW
- 40S ribosomal protein S15a
Coloring options: