IL_9B0Q_497
3D structure
- PDB id
- 9B0Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human top-back di-ribosome structure (Composite map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CGGGG*CAAG
- Length
- 9 nucleotides
- Bulged bases
- 9B0Q|1|s2|G|933
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9B0Q_497 not in the Motif Atlas
- Homologous match to IL_8CRE_434
- Geometric discrepancy: 0.2025
- The information below is about IL_8CRE_434
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 39
Unit IDs
9B0Q|1|s2|C|931
9B0Q|1|s2|G|932
9B0Q|1|s2|G|933
9B0Q|1|s2|G|934
9B0Q|1|s2|G|935
*
9B0Q|1|s2|C|1007
9B0Q|1|s2|A|1008
9B0Q|1|s2|A|1009
9B0Q|1|s2|G|1010
Current chains
- Chain s2
- 18S rRNA [Homo sapiens]
Nearby chains
- Chain lc
- 60S ribosomal protein L30
- Chain sB
- 40S ribosomal protein S3a
- Chain sN
- 40S ribosomal protein S13
- Chain sa
- 40S ribosomal protein S26
Coloring options: