IL_9B0Q_536
3D structure
- PDB id
- 9B0Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human top-back di-ribosome structure (Composite map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CGCU*AAAAG
- Length
- 9 nucleotides
- Bulged bases
- 9B0Q|1|s2|A|1825
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9B0Q_536 not in the Motif Atlas
- Geometric match to IL_1CSL_001
- Geometric discrepancy: 0.362
- The information below is about IL_1CSL_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_59580.1
- Basepair signature
- cWW-cHW-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
9B0Q|1|s2|C|1708
9B0Q|1|s2|G|1709
9B0Q|1|s2|C|1710
9B0Q|1|s2|U|1711
*
9B0Q|1|s2|A|1822
9B0Q|1|s2|A|1823
9B0Q|1|s2|A|1824
9B0Q|1|s2|A|1825
9B0Q|1|s2|G|1826
Current chains
- Chain s2
- 18S rRNA [Homo sapiens]
Nearby chains
- Chain aP
- Transfer RNA; tRNA
- Chain l5
- Large subunit ribosomal RNA; LSU rRNA
- Chain sX
- 40S ribosomal protein S23
Coloring options: