IL_9B0R_023

3D structure

PDB id

9B0R (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human hibernating class2 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.81 Å

Loop

Sequence

GGUC*GC

Length

6 nucleotides

Bulged bases

9B0R|1|L5|G|483

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B0R_023 not in the Motif Atlas

Geometric match to IL_1U9S_008

Geometric discrepancy: 0.3484

The information below is about IL_1U9S_008

Detailed Annotation

Stack outside cWW

Broad Annotation

Stack outside cWW

Motif group

IL_77710.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

27

Unit IDs

9B0R|1|L5|G|482
9B0R|1|L5|G|483
9B0R|1|L5|U|484
9B0R|1|L5|C|485
*
9B0R|1|L5|G|671
9B0R|1|L5|C|672

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Lr

60S ribosomal protein L28