IL_9B0S_037
3D structure
- PDB id
- 9B0S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human top-top di-ribosome structure (Composite map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GAAGGUGG*UGUUACAGC
- Length
- 17 nucleotides
- Bulged bases
- 9B0S|1|L5|G|748, 9B0S|1|L5|C|916
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9B0S_037 not in the Motif Atlas
- Geometric match to IL_8P9A_248
- Geometric discrepancy: 0.2384
- The information below is about IL_8P9A_248
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_43858.1
- Basepair signature
- cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
9B0S|1|L5|G|745
9B0S|1|L5|A|746
9B0S|1|L5|A|747
9B0S|1|L5|G|748
9B0S|1|L5|G|749
9B0S|1|L5|U|750
9B0S|1|L5|G|751
9B0S|1|L5|G|752
*
9B0S|1|L5|U|911
9B0S|1|L5|G|912
9B0S|1|L5|U|913
9B0S|1|L5|U|914
9B0S|1|L5|A|915
9B0S|1|L5|C|916
9B0S|1|L5|A|917
9B0S|1|L5|G|918
9B0S|1|L5|C|919
Current chains
- Chain L5
- 28S rRNA [Homo sapiens]
Nearby chains
- Chain LM
- 60S ribosomal protein L14
- Chain LS
- 60S ribosomal protein L18a
Coloring options: