IL_9B0S_114

3D structure

PDB id

9B0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human top-top di-ribosome structure (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GG*CGAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B0S_114 not in the Motif Atlas

Homologous match to IL_8CRE_086

Geometric discrepancy: 0.1645

The information below is about IL_8CRE_086

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_73355.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

9B0S|1|L5|G|2896
9B0S|1|L5|G|2897
*
9B0S|1|L5|C|3602
9B0S|1|L5|G|3603
9B0S|1|L5|A|3604
9B0S|1|L5|C|3605

Current chains

Chain L5

28S rRNA [Homo sapiens]

Nearby chains

Chain LR

60S ribosomal protein L19