IL_9B0S_118

3D structure

PDB id

9B0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human top-top di-ribosome structure (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGAAGG*UGUUGACG

Length

14 nucleotides

Bulged bases

9B0S|1|L5|A|3663, 9B0S|1|L5|U|3679, 9B0S|1|L5|C|3683

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B0S_118 not in the Motif Atlas

Homologous match to IL_8CRE_088

Geometric discrepancy: 0.1074

The information below is about IL_8CRE_088

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20047.1

Basepair signature

cWW-tSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

9B0S|1|L5|C|3660
9B0S|1|L5|G|3661
9B0S|1|L5|A|3662
9B0S|1|L5|A|3663
9B0S|1|L5|G|3664
9B0S|1|L5|G|3665
*
9B0S|1|L5|U|3677
9B0S|1|L5|G|3678
9B0S|1|L5|U|3679
9B0S|1|L5|U|3680
9B0S|1|L5|G|3681
9B0S|1|L5|A|3682
9B0S|1|L5|C|3683
9B0S|1|L5|G|3684

Current chains

Chain L5

28S rRNA [Homo sapiens]

Nearby chains

Chain LA

60S ribosomal protein L8

Chain Lp

60S ribosomal protein L37a

Chain S2

Small subunit ribosomal RNA; SSU rRNA