IL_9B0S_142

3D structure

PDB id

9B0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human top-top di-ribosome structure (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUG*UUUUU

Length

8 nucleotides

Bulged bases

9B0S|1|L5|U|4437

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B0S_142 not in the Motif Atlas

Homologous match to IL_8CRE_113

Geometric discrepancy: 0.146

The information below is about IL_8CRE_113

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_51387.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

21

Unit IDs

9B0S|1|L5|G|4405
9B0S|1|L5|U|4406
9B0S|1|L5|G|4407
*
9B0S|1|L5|U|4435
9B0S|1|L5|U|4436
9B0S|1|L5|U|4437
9B0S|1|L5|U|4438
9B0S|1|L5|U|4439

Current chains

Chain L5

28S rRNA [Homo sapiens]

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain LI

Ribosomal protein uL16-like