IL_9B0S_177
3D structure
- PDB id
- 9B0S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human top-top di-ribosome structure (Composite map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GAACGCG*CUAAGC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9B0S_177 not in the Motif Atlas
- Homologous match to IL_8P9A_365
- Geometric discrepancy: 0.1082
- The information below is about IL_8P9A_365
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_18487.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
9B0S|1|L7|G|21
9B0S|1|L7|A|22
9B0S|1|L7|A|23
9B0S|1|L7|C|24
9B0S|1|L7|G|25
9B0S|1|L7|C|26
9B0S|1|L7|G|27
*
9B0S|1|L7|C|52
9B0S|1|L7|U|53
9B0S|1|L7|A|54
9B0S|1|L7|A|55
9B0S|1|L7|G|56
9B0S|1|L7|C|57
Current chains
- Chain L7
- 5S rRNA [Homo sapiens]
Nearby chains
- Chain LD
- Large ribosomal subunit protein uL18
- Chain LJ
- 60S ribosomal protein L11
Coloring options: