IL_9B0S_192

3D structure

PDB id

9B0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human top-top di-ribosome structure (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUUAU*ACGUC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B0S_192 not in the Motif Atlas

Geometric match to IL_8VMB_003

Geometric discrepancy: 0.3331

The information below is about IL_8VMB_003

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_49751.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

9B0S|1|S2|G|108
9B0S|1|S2|U|109
9B0S|1|S2|U|110
9B0S|1|S2|A|111
9B0S|1|S2|U|112
*
9B0S|1|S2|A|349
9B0S|1|S2|C|350
9B0S|1|S2|G|351
9B0S|1|S2|U|352
9B0S|1|S2|C|353

Current chains

Chain S2

18S rRNA [Homo sapiens]

Nearby chains

Chain SE

Small ribosomal subunit protein eS4, X isoform

Chain SI

40S ribosomal protein S8

Chain SL

40S ribosomal protein S11