3D structure

PDB id
9B0S (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human top-top di-ribosome structure (Composite map)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
AC*GAAU
Length
6 nucleotides
Bulged bases
None detected
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9B0S_223 not in the Motif Atlas
Homologous match to IL_8P9A_412
Geometric discrepancy: 0.1687
The information below is about IL_8P9A_412
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_73108.1
Basepair signature
cWW-L-cWW-L
Number of instances in this motif group
29

Unit IDs

9B0S|1|S2|A|802
9B0S|1|S2|C|803
*
9B0S|1|S2|G|860
9B0S|1|S2|A|861
9B0S|1|S2|A|862
9B0S|1|S2|U|863

Current chains

Chain S2
18S rRNA [Homo sapiens]

Nearby chains

Chain SH
Small ribosomal subunit protein eS7
Chain SL
40S ribosomal protein S11
Chain SW
40S ribosomal protein S15a
Chain SX
40S ribosomal protein S23

Coloring options:


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