IL_9B0S_224

3D structure

PDB id

9B0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human top-top di-ribosome structure (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UUG*CUA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B0S_224 not in the Motif Atlas

Homologous match to IL_8CRE_429

Geometric discrepancy: 0.2604

The information below is about IL_8CRE_429

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_28037.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

9B0S|1|S2|U|805
9B0S|1|S2|U|806
9B0S|1|S2|G|807
*
9B0S|1|S2|C|856
9B0S|1|S2|U|857
9B0S|1|S2|A|858

Current chains

Chain S2

18S rRNA [Homo sapiens]

Nearby chains

Chain SE

Small ribosomal subunit protein eS4, X isoform

Chain SL

40S ribosomal protein S11

Chain SW

40S ribosomal protein S15a