IL_9B0S_230

3D structure

PDB id

9B0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human top-top di-ribosome structure (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GA*UUU

Length

5 nucleotides

Bulged bases

9B0S|1|S2|U|1016

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B0S_230 not in the Motif Atlas

Geometric match to IL_7KVT_002

Geometric discrepancy: 0.2083

The information below is about IL_7KVT_002

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

129

Unit IDs

9B0S|1|S2|G|925
9B0S|1|S2|A|926
*
9B0S|1|S2|U|1015
9B0S|1|S2|U|1016
9B0S|1|S2|U|1017

Current chains

Chain S2

18S rRNA [Homo sapiens]

Nearby chains

Chain SN

40S ribosomal protein S13

Chain SW

40S ribosomal protein S15a

Chain Sb

Small ribosomal subunit protein eS27