IL_9B0S_256
3D structure
- PDB id
- 9B0S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human top-top di-ribosome structure (Composite map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UGG*UCUGUGA
- Length
- 10 nucleotides
- Bulged bases
- 9B0S|1|S2|U|1494, 9B0S|1|S2|G|1497
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9B0S_256 not in the Motif Atlas
- Homologous match to IL_8P9A_440
- Geometric discrepancy: 0.151
- The information below is about IL_8P9A_440
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_34117.1
- Basepair signature
- cWW-L-R-L-cWW-L
- Number of instances in this motif group
- 7
Unit IDs
9B0S|1|S2|U|1333
9B0S|1|S2|G|1334
9B0S|1|S2|G|1335
*
9B0S|1|S2|U|1492
9B0S|1|S2|C|1493
9B0S|1|S2|U|1494
9B0S|1|S2|G|1495
9B0S|1|S2|U|1496
9B0S|1|S2|G|1497
9B0S|1|S2|A|1498
Current chains
- Chain S2
- 18S rRNA [Homo sapiens]
Nearby chains
- Chain SD
- Small ribosomal subunit protein uS3
- Chain SK
- 40S ribosomal protein S10
- Chain SU
- 40S ribosomal protein S20
- Chain Sd
- 40S ribosomal protein S29
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