IL_9B0S_259

3D structure

PDB id

9B0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human top-top di-ribosome structure (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUG*CG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B0S_259 not in the Motif Atlas

Homologous match to IL_8P9A_443

Geometric discrepancy: 0.1126

The information below is about IL_8P9A_443

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_51454.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

45

Unit IDs

9B0S|1|S2|C|1363
9B0S|1|S2|U|1364
9B0S|1|S2|G|1365
*
9B0S|1|S2|C|1374
9B0S|1|S2|G|1375

Current chains

Chain S2

18S rRNA [Homo sapiens]

Nearby chains

Chain SR

40S ribosomal protein S17

Chain Sa

40S ribosomal protein S26