IL_9B0S_261

3D structure

PDB id

9B0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human top-top di-ribosome structure (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

ACUA*UUCU

Length

8 nucleotides

Bulged bases

9B0S|1|S2|C|1403, 9B0S|1|S2|U|1404

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B0S_261 not in the Motif Atlas

Homologous match to IL_8CRE_481

Geometric discrepancy: 0.1762

The information below is about IL_8CRE_481

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_78800.2

Basepair signature

cWW-cSH-L-cWW

Number of instances in this motif group

3

Unit IDs

9B0S|1|S2|A|1402
9B0S|1|S2|C|1403
9B0S|1|S2|U|1404
9B0S|1|S2|A|1405
*
9B0S|1|S2|U|1441
9B0S|1|S2|U|1442
9B0S|1|S2|C|1443
9B0S|1|S2|U|1444

Current chains

Chain S2

18S rRNA [Homo sapiens]

Nearby chains

Chain SQ

Small ribosomal subunit protein uS9

Chain SU

40S ribosomal protein S20

Chain Sg

Receptor of activated protein C kinase 1