IL_9B0S_263

3D structure

PDB id

9B0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human top-top di-ribosome structure (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CG*CGG

Length

5 nucleotides

Bulged bases

9B0S|1|S2|G|1428

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B0S_263 not in the Motif Atlas

Geometric match to IL_5J7L_019

Geometric discrepancy: 0.2691

The information below is about IL_5J7L_019

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.14

Basepair signature

cWW-L-cWW

Number of instances in this motif group

50

Unit IDs

9B0S|1|S2|C|1412
9B0S|1|S2|G|1413
*
9B0S|1|S2|C|1427
9B0S|1|S2|G|1428
9B0S|1|S2|G|1429

Current chains

Chain S2

18S rRNA [Homo sapiens]

Nearby chains

Chain SQ

Small ribosomal subunit protein uS9

Chain ST

40S ribosomal protein S19