3D structure

PDB id
9B0S (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human top-top di-ribosome structure (Composite map)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
GUC*GUC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9B0S_272 not in the Motif Atlas
Homologous match to IL_8CRE_468
Geometric discrepancy: 0.0901
The information below is about IL_8CRE_468
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_01003.1
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
174

Unit IDs

9B0S|1|S2|G|1706
9B0S|1|S2|U|1707
9B0S|1|S2|C|1708
*
9B0S|1|S2|G|1826
9B0S|1|S2|U|1827
9B0S|1|S2|C|1828

Current chains

Chain S2
18S rRNA [Homo sapiens]

Nearby chains

Chain AT
Transfer RNA; tRNA
Chain L5
Large subunit ribosomal RNA; LSU rRNA
Chain Ln
60S ribosomal protein L41
Chain Pt
Transfer RNA; tRNA

Coloring options:


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