IL_9B0S_298
3D structure
- PDB id
- 9B0S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human top-top di-ribosome structure (Composite map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GAAC*GAGUUCAAGAGGGC
- Length
- 18 nucleotides
- Bulged bases
- 9B0S|1|l5|G|409, 9B0S|1|l5|G|413
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9B0S_298 not in the Motif Atlas
- Geometric match to IL_8P9A_243
- Geometric discrepancy: 0.1238
- The information below is about IL_8P9A_243
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_81516.2
- Basepair signature
- cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L
- Number of instances in this motif group
- 6
Unit IDs
9B0S|1|l5|G|387
9B0S|1|l5|A|388
9B0S|1|l5|A|389
9B0S|1|l5|C|390
*
9B0S|1|l5|G|401
9B0S|1|l5|A|402
9B0S|1|l5|G|403
9B0S|1|l5|U|404
9B0S|1|l5|U|405
9B0S|1|l5|C|406
9B0S|1|l5|A|407
9B0S|1|l5|A|408
9B0S|1|l5|G|409
9B0S|1|l5|A|410
9B0S|1|l5|G|411
9B0S|1|l5|G|412
9B0S|1|l5|G|413
9B0S|1|l5|C|414
Current chains
- Chain l5
- 28S rRNA [Homo sapiens]
Nearby chains
- Chain l8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain lP
- 60S ribosomal protein L17
- Chain lY
- 60S ribosomal protein L26
- Chain ll
- 60S ribosomal protein L39
Coloring options: