IL_9B0S_354

3D structure

PDB id

9B0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human top-top di-ribosome structure (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AGA*UAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B0S_354 not in the Motif Atlas

Homologous match to IL_8P9A_270

Geometric discrepancy: 0.0551

The information below is about IL_8P9A_270

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

9B0S|1|l5|A|1749
9B0S|1|l5|G|1750
9B0S|1|l5|A|1751
*
9B0S|1|l5|U|1779
9B0S|1|l5|A|1780
9B0S|1|l5|U|1781

Current chains

Chain l5

28S rRNA [Homo sapiens]

Nearby chains

Chain l7

5S ribosomal RNA; 5S rRNA

Chain lD

Large ribosomal subunit protein uL18

Chain lI

Ribosomal protein uL16-like