IL_9B0S_355

3D structure

PDB id

9B0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human top-top di-ribosome structure (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUCU*AAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B0S_355 not in the Motif Atlas

Geometric match to IL_4V9F_053

Geometric discrepancy: 0.3257

The information below is about IL_4V9F_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_09990.4

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

9B0S|1|l5|G|1753
9B0S|1|l5|U|1754
9B0S|1|l5|C|1755
9B0S|1|l5|U|1756
*
9B0S|1|l5|A|1775
9B0S|1|l5|A|1776
9B0S|1|l5|C|1777

Current chains

Chain l5

28S rRNA [Homo sapiens]

Nearby chains

Chain aP

Transfer RNA; tRNA

Chain lD

Large ribosomal subunit protein uL18

Chain lI

Ribosomal protein uL16-like