IL_9B0S_382

3D structure

PDB id

9B0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human top-top di-ribosome structure (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GG*CUC

Length

5 nucleotides

Bulged bases

9B0S|1|l5|U|2769

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B0S_382 not in the Motif Atlas

Homologous match to IL_8CRE_070

Geometric discrepancy: 0.4394

The information below is about IL_8CRE_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82107.5

Basepair signature

cWW-cWW

Number of instances in this motif group

31

Unit IDs

9B0S|1|l5|G|2549
9B0S|1|l5|G|2550
*
9B0S|1|l5|C|2768
9B0S|1|l5|U|2769
9B0S|1|l5|C|2770

Current chains

Chain l5

28S rRNA [Homo sapiens]

Nearby chains

Chain lg

60S ribosomal protein L34

Chain lk

60S ribosomal protein L38