IL_9B0S_388
3D structure
- PDB id
- 9B0S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human top-top di-ribosome structure (Composite map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UGGAAUG*CGAGAGA
- Length
- 14 nucleotides
- Bulged bases
- 9B0S|1|l5|U|2661, 9B0S|1|l5|A|2674
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9B0S_388 not in the Motif Atlas
- Homologous match to IL_8P9A_301
- Geometric discrepancy: 0.1409
- The information below is about IL_8P9A_301
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_69543.3
- Basepair signature
- cWW-tSH-L-R-tSS-tHS-L-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
9B0S|1|l5|U|2656
9B0S|1|l5|G|2657
9B0S|1|l5|G|2658
9B0S|1|l5|A|2659
9B0S|1|l5|A|2660
9B0S|1|l5|U|2661
9B0S|1|l5|G|2662
*
9B0S|1|l5|C|2672
9B0S|1|l5|G|2673
9B0S|1|l5|A|2674
9B0S|1|l5|G|2675
9B0S|1|l5|A|2676
9B0S|1|l5|G|2677
9B0S|1|l5|A|2678
Current chains
- Chain l5
- 28S rRNA [Homo sapiens]
Nearby chains
- Chain lR
- 60S ribosomal protein L19
- Chain lZ
- 60S ribosomal protein L27
- Chain lc
- 60S ribosomal protein L30
- Chain lg
- 60S ribosomal protein L34
- Chain lp
- 60S ribosomal protein L37a
- Chain sN
- 40S ribosomal protein S13
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