IL_9B0S_427

3D structure

PDB id

9B0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human top-top di-ribosome structure (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAU*GCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B0S_427 not in the Motif Atlas

Geometric match to IL_8P9A_337

Geometric discrepancy: 0.1087

The information below is about IL_8P9A_337

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

9B0S|1|l5|C|4466
9B0S|1|l5|A|4467
9B0S|1|l5|U|4468
*
9B0S|1|l5|G|4489
9B0S|1|l5|C|4490
9B0S|1|l5|G|4491

Current chains

Chain l5

28S rRNA [Homo sapiens]

Nearby chains

Chain lB

Large ribosomal subunit protein uL3

Chain lV

60S ribosomal protein L23