IL_9B0S_433

3D structure

PDB id

9B0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human top-top di-ribosome structure (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCAU*AGGCG

Length

9 nucleotides

Bulged bases

9B0S|1|l5|C|4720

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B0S_433 not in the Motif Atlas

Geometric match to IL_6YML_002

Geometric discrepancy: 0.3343

The information below is about IL_6YML_002

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.1

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

44

Unit IDs

9B0S|1|l5|C|4582
9B0S|1|l5|C|4583
9B0S|1|l5|A|4584
9B0S|1|l5|U|4585
*
9B0S|1|l5|A|4717
9B0S|1|l5|G|4718
9B0S|1|l5|G|4719
9B0S|1|l5|C|4720
9B0S|1|l5|G|4721

Current chains

Chain l5

28S rRNA [Homo sapiens]

Nearby chains

Chain lB

Large ribosomal subunit protein uL3

Chain lO

60S ribosomal protein L13a