IL_9B0S_444

3D structure

PDB id

9B0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human top-top di-ribosome structure (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCUCGGAUAG*UGCGGAGUG

Length

19 nucleotides

Bulged bases

9B0S|1|l5|C|4757, 9B0S|1|l5|U|4758, 9B0S|1|l5|A|4764, 9B0S|1|l5|G|4870, 9B0S|1|l5|C|4871, 9B0S|1|l5|G|4873, 9B0S|1|l5|U|4876

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9B0S|1|l5|C|4756
9B0S|1|l5|C|4757
9B0S|1|l5|U|4758
9B0S|1|l5|C|4759
9B0S|1|l5|G|4760
9B0S|1|l5|G|4761
9B0S|1|l5|A|4762
9B0S|1|l5|U|4763
9B0S|1|l5|A|4764
9B0S|1|l5|G|4765
*
9B0S|1|l5|U|4869
9B0S|1|l5|G|4870
9B0S|1|l5|C|4871
9B0S|1|l5|G|4872
9B0S|1|l5|G|4873
9B0S|1|l5|A|4874
9B0S|1|l5|G|4875
9B0S|1|l5|U|4876
9B0S|1|l5|G|4877

Current chains

Chain l5

28S rRNA [Homo sapiens]

Nearby chains

Chain lE

Large ribosomal subunit protein eL6

Chain lH

60S ribosomal protein L9

Chain lM

60S ribosomal protein L14

Chain lO

60S ribosomal protein L13a

Chain lS

60S ribosomal protein L18a